Experiments with Parsons-Zobel plots

Fix missing comma

calculating with more chemistries

Calculating various equilibria

Checking for convergence and plotting differential capacitance

Add scripts to run different equilibrium conditions

Add notebooks to calculate different equilibrium parameters

Create file to analyze diffcap results

use sumatra to run simulations

Use sumatra data directory

Change from docopt to json for sumatra

Save output and remove viewer

Initialized with scripts for Aline's SURF project