Found 124 repositories(showing 30)
ome
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
CellProfiler
Read and write life sciences file formats
glencoesoftware
Bio-Formats image file format to raw format converter
scifio
SCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.
nf-core
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
andreped
Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
imaging-formats
Modern Bio-Formats wrapper with clean lazy Python API
ahnlabb
A julia package to load images using bioformats
WolframResearch
Package for interacting with Bio-Formats library in the Wolfram Language
BiologyTools
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
PolusAI
Interface to the Bioformats Java library
pskeshu
A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
sebi06
This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
Romain-Laine
This code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.
PerkinElmer Operetta Importer using BioFormats!
Extension to add Bio-Formats image support - **QuPath v0.1.2 only**
sebi06
Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.
imaris
No description available
Bio-Formats image file format to raw format converter
imaging-formats
No description available
SchmollerLab
Portable Java 8 and JDK 8 for Windows. Used for Cell-ACDC software to run BioFormats in Python
Ebola-Chan-bot
5D图像读写库，全网最快第三方OIR读入器
BiologyTools
A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
BiologyTools
Bioformats java library converted to .NET6 with IKVM
bioimage-analysis
No description available
BiologyTools
Bio Library in .NET8. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
BiologyTools
A GUI-less version of Bio .NET library for editing & annotating various microscopy image formats. Supports all bioformats supported images. Integrates with ImageJ, running ImageJ filters & macro functions.
Opens bio-formats images in BigDataViewer
henriksson-lab
No description available
AzHicham
No description available