GitHub Explorer

by Alexey Ratnikov

GitHub Explorer

GitHub Explorer|TRENDING COMPARE|FEEDBACK

Back to search

Copyright (c) 2026 Alexey Ratnikov

ome/bioformats - GitHub Explorer | GitHub Explorer | Trending | Compare

bioformats

ome•PUBLIC

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bio-formatsformat-converterformat-readerimagejavalife-sciences-image

GNU General Public License v2.0

Created on Oct 4, 2011

Updated on Apr 7, 2026

Stars

418

Forks

253

Watchers

418

Open Issues

171

Repository Health Score

🧡

58/100

Fair

Overall repository health assessment

Score Breakdown

Activity

Active development - updated this week

30/30

100%

lightsheet

metadata

whole-slide-imaging

wsi

Community

418 stars, 253 forks

3/30

10%

Documentation

Has description, wiki, license

20/20

100%

Maintenance

40.9% issue ratio

5/20

25%

Health score is calculated based on activity, community engagement, documentation quality, and maintenance practices

Languages

Java

63.7%

PostScript

35.0%

MATLAB

0.8%

HTML

0.2%

Python

0.1%

Shell

0.1%

Batchfile

0.1%

Dockerfile

0.0%

Issues Analytics

31

Total Issues

All time

9

Open

29% of total

22

Closed

71% of total

1mo

Avg Close Time

Avg response

Issues Activity: Last 6 months

Top Labels

Hottest Issues

1

#4372 Opening different video types with Bio-Formats Importer in Fiji

6

closed

2

#4364 LIF ArrayIndexOutOfBoundsException

question

6

closed

3

#4389 Nikon NEF distorted image

5

open

4

#4377 `EOFException` when initializing Imaris .ims file

5

open

5

#4420 the return of the Leica SCN reader pink image bug, for SCN files generated by the Leica FL 120 instrument

4

open

Dependencies

No package.json found

This might not be a Node.js project

Top Contributors

1

melissalinkert

User

8.3k

commits

2

ctrueden

User

3.7k

commits

3

sbesson

User

2.6k

commits

4

dgault

User

1.4k

commits

5

qidane

User

963

commits

6

joshmoore

User

486

commits

7

chris-allan

User

443

commits

8

jburel

User

377

commits

9

hinerm

User

239

commits

10

mtbc

User

156

commits

Recent Commits

Bump to 8.6.0-SNAPSHOT

Melissa Linkert•2 weeks ago

4fe6b0dView on GitHub

Bump release version to 8.5.0

Melissa Linkert•2 weeks ago

877c317View on GitHub

Merge pull request #4379 from melissalinkert/gh-4376

Sébastien Besson•3 weeks ago

d51c6f8View on GitHub

Update DICOM float formatting to be consistent with suggestions in https://github.com/ome/bioformats/pull/4379#issuecomment-3470211435

Melissa Linkert•3 weeks ago

18fd8beView on GitHub

Merge branch 'develop' of github.com:openmicroscopy/bioformats into gh-4376

Melissa Linkert•3 weeks ago

dcf98dcView on GitHub

Merge pull request #4403 from melissalinkert/czi-modulo-sizes-develop

Sébastien Besson•3 weeks ago

4f37585View on GitHub

Merge pull request #4373 from melissalinkert/czi-inactive-plate-develop

Sébastien Besson•3 weeks ago

59419bdView on GitHub

Merge pull request #4354 from melissalinkert/dicom-file-grouping-develop

Sébastien Besson•4 weeks ago

9054223View on GitHub

Merge pull request #4419 from melissalinkert/ome-common-6.2.1

Sébastien Besson•1 month ago

ec98173View on GitHub

Merge pull request #4417 from melissalinkert/gh-4398

Sébastien Besson•1 month ago

ba8ce3fView on GitHub

Update to ome-common 6.2.1

Melissa Linkert•1 month ago

fb9179fView on GitHub

Merge pull request #4418 from melissalinkert/ome-codecs-1.1.3

Sébastien Besson•1 month ago

0db2856View on GitHub

Update to ome-codecs 1.1.3

Melissa Linkert•1 month ago

b87e033View on GitHub

Merge pull request #4395 from melissalinkert/gh-4113

Sébastien Besson•1 month ago

9370630View on GitHub

Update BigTIFF test to check that two planes can be written successfully

Melissa Linkert•1 month ago

d00a3c0View on GitHub

View all commits