Found 18 repositories(showing 18)
Irrationone
Automated, probabilistic assignment of cell types in scRNA-seq data
ZJUFanLab
The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and CHETAH, and CellMatch database
Irrationone
Analysis pipelines for cellassign manuscript
tkik
No description available
dlamay
No description available
Chihiro2024
Fixing R Packages
wukathy
Walking through the code for CellAssign (https://github.com/Irrationone/cellassign/)
nceglia
Container for running cellassign.
dlamay
No description available
ebi-gene-expression-group
CellAssign is a marker-based cell type identification method.
ebi-gene-expression-group
Nextflow pipeline for cellassign-cli package.
sharifrahmanie
Automatic cell type assigning for Single-cell RNA-Seq dataset by providing count matrix and marker list
Ann-Holmes
No description available
kieranrcampbell
Probabilistic assignment of single-cell RNA-seq to known types
effie923
No description available
shailafye
Multiple pipelines to run scRNA-seq data through to generate automated cell types through probability scoring. Visualization through tSNE and UMAP.
No description available
Niyati1123
This repo documents my practice in single-cell RNA-seq analysis, using 10X Genomics data to perform quality control, normalisation, dimensionality reduction (PCA/UMAP), and automated cell type assignment with cellassign. It is based on tutorials but adapted for clarity and deeper learning.
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