Found 55 repositories(showing 30)
nf-core
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
In this module, you will learn how to download raw sequence data, calculate differentially methylated regions, and run a canonical methyl-seq pipeline in Nextflow
dpryan79
A local realigner around InDels for MethylSeq data
CompEpigen
Read-level methylome simulator
liupeng2117
MethylSeqDesign is a framework for power calculation and study design of Methy-Seq experiments by utilizing information from pilot data.
Wasatch-Biolabs-Bfx
An R package for managing, summarizing, and analyzing third-generation methylation sequencing data (.ch3 files). Includes database creation, QC, differential methylation, and visualization tools.
jchap14
No description available
thk2008
scripts to analyze and generate the figures for the methyl-seq platform comparison article
erichanse
Workflow for DNA Methyl-Seq Analysis (Enzymatic, Paired-End, Illumina)
VIBTOBIlab
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
GuLabDNA
No description available
PeteHaitch
Collection of Public DNA Methylation Sequencing Datasets
Wasatch-BioLabs
R package for DNA methylation analysis on Direct Whole Methylome Sequencing (dWMS) data.
wal-yan
A lightweight pipeline for collecting Picard metrics from targeted sequence mapping files.
AmrR101
R package for DNA methylation analysis on Direct Whole Methylome Sequencing (dWMS) data.
cancerit
CGP implementation of Nextflow methylseq
CTrierMaansson
No description available
arbazattar11
No description available
Jaberw0cky
No description available
adeslatt
Minimum methylseq workflow with Bismark
Cherry-Kim
No description available
mapostolides
No description available
ccerutti88
No description available
nf-core-tf
No description available
perishky
Tool for evaluating clonal DNA methylation concordance and heterogeneity in methyl-seq data
neuropathbasel
Scripts to preprocess methylseq data into pseudo-array form.
PayamEmami
No description available
CGSbioinfo
No description available
NataliaKraszewska
RNA-seq and RRBS snakemake workflows.
vonMeyennLab
A Nextflow pipeline to align and quantify Methylation (Bisulfite) sequencing data.