A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gene regulatory network (tpGRN) for single-cell transcriptomic data

Clone of the Bioconductor repository for the scran package.

Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.

A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing

Single cell analysis in Javascript

Wayland screen capture

Brendan's skeleton scRNAseq workflow using scran, Seurat, and scClustViz

Scran is yet another port of Kran to Scheme/Lambdanative. Roughly R5RS.

A slimmed down version of scran, based on the C++ library of the same name.

Single-cell data analysis, from C++ to Python

scran, but in C++.

An archived version of the scran repository, see https://github.com/MarioniLab/scran for the active version.

A wrapper and container for UIKit Animation to make animation sequences clearly. No more horrible nested block, you can add animation one by one, just like NSArray's addObject.

一个模仿scrapy的node爬虫框架

Justification for the variance modelling and HVG detection methods in scran.

Tunable Scrambler for CNFs

A jQuery plugin that animates elements as they are scrolled into view.

App for reducing the food waste

No description available

Code for further development of the summation-based scaling normalization method, as implemented in the scran package.

A command line interface to scran

Git branch based note-taking in vim

scranking is a python library that scrapes the html from SwimCloud

scran is a parser combinator library heavily influenced by nom

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analysis of Scranos kernel driver

This course will introduce biologists and bioinformaticians to the field of single-cell RNA sequencing. We will cover a range of software and analysis workflows, from best practices for filtering scRNA-seq data to downstream analysis of cell clustering and temporal sorting.

Single Cell Rna-seq ANalysis